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Epic Code LAB3359 Respiratory Pathogen Panel PCR

Important Note

This test detects traditional respiratory viruses. Please consider test #8889 HSV Culture or #4234 CMV Culture if clinically indicated.

See Ordering Instructions below for cases involving Avian Flu.

Test Name Alias

Respiratory Pathogens by Film Array | Film Array Respiratory Viruses | Metapneumovirus Antigen by DFA | Respiratory Viruses by Film Array

Interface Order Alias

11668

Ordering Instructions

Repeat orders will not be accepted on subsequent specimens submitted within 7 days.

If Avian Influenza (Bird Flu) is suspected:

  • Corewell Health providers and care team members:
    • Perfect Serve Corewell Health Infection Prevention.
  • Non-Corewell Health Facilities:
  • Testing Codes:
    • Order and collect for Respiratory Virus by Film Array LAB3359. Include a filled out MDHHS Lab Requisition (MDHHS-6097 Viral Respiratory Testing).
      • Note: Testing must be collected in a clinical facility. Corewell Health Draw Sites/Outpatient Labs do not collect swabs.
    • If positive for Influenza A and no subtype detected, specimen will be forwarded to MDHHS lab.

Icons & Photos

Viral Transport Media (UTM) Kit with Mini-Tip Swab for NP collection [ITM-1140078]  

 

Collection Instructions

For optimal detection, collect NP swabs for patients with primarily upper respiratory tract infections and BAL for patients with lower respiratory tract infections.

Do not send both a NP swab and BAL fluid to the lab for testing.

 

Submit only one specimen type:

 

Specimen Type: Nasopharyngeal Swab (NP)
Container/Tube: 3-mL UTM/Swab or Saline Collection Kit 
Collection Instructions:  

  • If possible, obtain specimen during the acute phase of the illness during the greatest amount of viral shedding. 
  • Tilt the head of the patient, gently insert the swab through one of the nostrils and into the nasal passage.
  • Rotate the swab tip several times across the mucosal surface.
  • Remove the swab and insert into the red top tube of viral transport medium (UTM) immediately.
  • Push the swab into the tube and break the plastic shaft swab at the break line.
  • Replace cap and screw on tightly.
  • Label specimen with at least 2 patient identifiers (usually name and date of birth)
  • Send to lab immediately
  • Refrigerate if there will be a delay in reaching the laboratory.

Note: ESwab is acceptable but not preferred specimen collection container.

 

Specimen Type: Bronchoalveolar Lavage, BAL
Container/Tube: Sterile container
Volume: 2 mL
Minimum volume: 1 mL

Collection Instructions:

  • Label container with patient’s full name and birthdate or Spectrum Health MRN. Also include specimen source.
  • Collect the lavage (not less than 1-2 mL of fresh, unfixed material) in a sterile, leak-proof container. 
  • Indicate on the order site lobe and pertinent clinical data (i.e. clinical impression, past diagnosis, radiographic findings and history of radiation or chemotherapy should be included in the order.) 
  • Refrigerate if there will be a delay in reaching the laboratory.

 

UNACCEPATABLE Specimen Types: NP washings, Sputum, Tracheal lavage/aspirate

Specimen Stability

Ambient: Send to laboratory as soon as possible

Refrigerate: 3 days

Frozen: 30 day

Laboratory Retention: 4 days

Test Frequency

Available daily, routine TAT 24 hours.

 

STAT TAT is 2 hours from receipt at SHRL (35 Michigan, Grand Rapids). Test is run as soon as the specimen arrives in the SHRL Microbiology department.

Reference Range

Negative for Adenovirus PCR, Bordetella pertussis PCR, Bordetella parapertussis PCR, Chlamydia pneumoniae PCR, Coronavirus 229E PCR, Coronavirus HKU1 PCR, Coronavirus NL63 PCR, Coronavirus OC43 PCR, Influenza A 2009 H1 PCR, Influenza A H1 PCR, Influenza A H3 PCR, Influenza A PCR, Influenza B PCR, Metapneumovirus PCR, Mycoplasma pneumoniae PCR, Parainfluenza 1 PCR, Parainfluenza 2 PCR, Parainfluenza 3 PCR, Parainfluenza 4 PCR, Respiratory Syncytial Virus PCR, Rhinovirus-Enterovirus PCR, SARS-CoV-2 (COVID-19)

Performing Department

Microbiology

Performing Department Laboratory Location

Corewell Health Reference Laboratory, Grand Rapids, MI
Corewell Health Lakeland St. Joseph Laboratory, St. Joseph, MI

Methodology

Polymerase Chain Reaction (PCR)

CPT

0202U

CDM Code

3000202U01

Epic Test ID

1230100690

LOINC

Adenovirus PCR: 39528-5

Bordetella pertussis PCR: 23826-1

Chlamydia pneumonia PCR: 34645-2

Coronavirus 229E PCR: 41003-5

Coronavirus HKU1 PCR: 62423-9

Coronavirus NL63 PCR: 41005-0

Coronavirus OC43 PCR: 41009-2

Influenza A PCR: 34487-9

Influenza A H3 PCR: 49524-2

Influenza A H1 PCR: 49521-8

Influenza A 2009 H1 PCR: 55465-9

Influenza B PCR: 40982-1

Metapneumovirus PCR: 38917-1

Mycoplasma pneumonia PCR: 29257-3

Parainfluenza 1 PCR: 29908-1

Parainfluenza 2 PCR: 29909-9

Parainfluenza 3 PCR: 29910-7

Parainfluenza 4 PCR: 41010-0

RSV PCR: 40988-8

Rhinovirus-Enterovirus PCR: 40991-2

 

Mayo Access Code

SHO11668

Reviewed Date

9/7/2023

Updated Date

10/9/2024 - Test Name